POL1_CPSMV
RNA1 polyprotein
MKFFAGQTVMDVLQHVSSPTTNLRLLSYCNLKKEEDGKMMLAIKEQRHRR
LLTLSYGAMCFQFSNSVGDEGIEVDDDELMFEIFDALLRTKISNSKGMTH
LYSWMRGVYLSTFKVEVQCDDYNSNLLEKDLAGEAQGLSQFVSGLADWIP
SRVKTLAGYAAEGIIEAFKKHFDKLLVEYCPMAVAACSWITTVWTTIKEW
VQSAMDAMSWIMAGCTELISWGMCVIAGSCALSLLEKALVAMGLISSSFD
LAGIFVRSAVVGAFCLTVVNKRSRNCAELLQLVSLAVGAVSSATSSCFQS
PVGQATDVSAESQSGGVEMLESLAKNLTNFCDGTLVSIGKTCNAVNSINT
AAGTIKNLVGRLLSMLSNFAYKLLGLESTFLRDASVVFSENVDGWLKQIS
WCQDQFLAKAYINQDELMVLRSLITRGEVMQREMIMGGMKVSPTVCGLIN
KGCTDLAKLMAGAVMHGTSGTRKIPFVVYAHGASRVGKTMVINRLIEDFR
KELELGEDCVYPRNVVDDYWSGYKRQPIVVIDDFGAVSSDPSAEAQLIPL
ISSAPYPLNMADLSEKGMHFDSAIVMCSSNFIECSPESKVRDEMAFRNRR
HVLFTVSLDPNIPYDGDDITKNQIYEIKTWFHDSYHVEATFTSYGDLLAY
CKNKWVEHNTEQEANLKQLGVKKESVAFQQFRSILDLAVFVNQDAENFKQ
RLETPDGRCHFVSCYDKSGILRHYTIDATGDVQEMEKVDSSLDDILLEKT
NKMVLAAYKMIKYHKDTNLVIKTQLADLVDPTKYTADFQFDGVIGSPLFS
SQVMPSVKALPLWQRMVLYTVGQNLGRTHSSWYEGIKDKCMLALSKAYST
EIKDWPVALKIVVGVILATVAGKAFWRFYASMADAGNGGHFVGAVASAFA
GSQAVVAQSRKPNRFDVAQYRYRNIPLRKRNWAEGQMSLDQSTMLIMEKC
KANFVFSNISCQIVMLPGRQFLCYKHVFASLNSPMYVDIYTANKKYKLYY
KPQNRVYFETDSEIMLYKDASLEDIPASCWDLFCFDAEKSLPRGSFPAEI
LSCKLDRTTNQHIPEWADISARTVNQKLDVEFGEYQTIFYSYLQYDVSTK
AEDCGSLIIATIDGRKKIIGIHTAGRANRSGFASYMPQVEIPVQAQAAEK
FFDFLEKEQHVTEGIGKVGNLKKGVWVPLPTKTNLVETPKEWHLGTEKTK
EPSILSSTDLRLGDKQYDPFVGGIQKYAEPMGILDDEVLRHVATDIVEEW
FDCVDPQEDTFEEVDLQVAINGLEGMEYMERVPMATSEGFPHILTRKSGE
KGKGRFVYGDGEIFDLIPGTSVHEAYLTLEETCADTVPALVGIECPKDEK
LPLRKIYEKPKTRCFTVLPMEYNLVVRRKFLKFVVFIMKNRHRLSCQVGI
NPYGMEWSRLAMSLLEKGNNILCCDYSSFDGLLTKQVMHLMSEMINELCG
GSSRLKQQRTNLLMACCSRYALCKGEVWRVECGIPSGFPLTVICNSIFNE
LLVRYSYIKICQQARVPATITYGFSTFVKMVTYGDDNLLSVQSAITHVFD
GTKLKEFLKLNGITITDGKDKTSPVLNFRNLEDCDFLKRGFKKESDVVWV
GPEEKESLWAQLHYVTTNNLEKHEAYLVNVVNVIRELYLHDPREAAELRR
KAIQNVDFLKENPKDLPTMAAIKEFYNMQRQQQFVDSNDNLDSLLNPDFL
FVAPHRKMHEAEMELVPKWYLRDLGKAPINVLTGEADRICVLVNASIPDH
LLPEKVVNISWPYGPGRGGLPTHGWAQANLYNPNSAVVKKLRTLVNQNPD
DRVDICFRHDAVPVAIATIIFLVHLGKVKGRSANEYLTKIIDSAKSLKFL
PKECDIIF
Legend:
Inside
Membrane
Outside
Re-entrant loop
Beta barrel inside
Periplasm
Interfacial helix
Legend:
Inside
Membrane
Outside
Re-entrant loop
Beta barrel inside
Periplasm
Interfacial helix