POL1_SDVS5
RNA1 polyprotein
MEIYGFSPLSFQDTESWKNSAFAACRGCKTYPIEEVGTDGSVRIRELPVG
LVLKGVMAQYRSILWTQFVADPATTTVDRKSFDFWLFCRRAEAAQERAFR
ARQSKRAAKAAALDAEGLIDRSYKGRTYKVSTRGLSWKSVRAAQKAARNA
AKNFGFAISANPFSALSALPSEGKGLSAGETPATVAEVAPQCFWAALRSL
KREFSETPVEDLPFLGLVLPALPQRNGELARTLRAQLRAHQAARVVASGV
SLREIPRRTTTTVKVVVPRVTIPVVTFNGAVLHHPKHPVIVALLKRVTIR
AKPICERRTYVRLVDGPGLFPSPRTPTLDLGFMEKVSELATMPGDSIEKC
IAIKCILSNDYNFKEDADMGDVLLSLQSKYTGGGDTAEHRGFISGALYGA
GVCVVTSAWKFLDATLHASQIGTQISQILDYIQSGLAWLSSSYASIANFF
TKGKVYIMECLELVKAKLPSYLFSAEVGRYILLLLGVFLCLGLVNSLIYS
VAPQYSLSFGTVCKISLGALALVGLGDLVAYLFNSPGAKLRAFVNIVCNM
CGCKNFFAPSSDGEERSGFSVLSMMGAICALQSLLPANVSRFSWDCGKWA
QTFKTGFDCHEKFATVCESLSVWLLSKVGLFKSSESQAMQTILLSSGINT
CGWLEKVAAFHSDVHSSQICIPDLLLRARQLIETGDTISDLLSNSTVSLS
FLLRERIKLALRELKEDHTQLQLAVDVSVSSECPFVLFFAGDSGVGKSTA
MKKFREEVLDKLGYPKTARFYPRNPGEKFWSGYLRHTAVIYDDFAQIPQG
DMTYDEAELIRIVTNAVVTVPMAIAEEKGRTFRSKFVFACTNRYCESEDA
PLADEMAFRRRRHLYIHVARKPGVEPGPRGVDNLEFSEMDNRDSNGEPAY
QLNDQGKRVLINQKLTYDQLLQLYFERYQAFKVLEGQLEGSVARAPSSSN
YEGCDNWWTLVGSEAKFEAVYFNGEPVSEDDQLTQLGNYKTRYDILRARV
ILESIDYADCDFIIKNFSAMGEGIYHADPEVNATGQRHFSAMSPVTRRLI
CSCLKTRREDEIKSHSLLSKFKSLLTVPVDAWKAAPAWFKCISLLLVAGG
VGYALCRAISGIIGIFRKGPAAASLALFSGGIGAVLRGDSPDDPREERDN
PDVIVTKGRGKAIWAGAEIPEALEALRKSQVVLMGTGRKGEPVMCSALPI
TSHSVLCTTHEIEAFDPNQNMSLIVNNSIYSFVLIPGAIMYKRYDQPNLV
DKVHELVRVDLPKNKGFSLNARAQFSEDFYDNGTAMKCWVVPNKNPAVAD
IMRKVDCEKSSQIIDIFASELSRSSGCEPVRQTQRFIYADGPALNGHCGR
LLCANLAGHWRVIGMCAGEGKNRAGVTKALYADIPHEFLRADNLNAVQRG
AELDAAILDRFSIPISECRKELTPMTTRLGYVVGQYPRALRKTSIVPSII
HDNLWRKPETEPTILGKIDDRSPFPYDPYATIGEKFVQEVGPIDLSVGSD
ASLVVANIGSSWKAVGKPQCPTVLTWEVAINGDAAIPYCERLPLSTSEGY
PDSIQRNFGEKGKKRFFDLKGENVRVPTPALMEELEVLERELQKEEVCLT
CINTACAKDEKTAPKKVRVQPKTRIFEILPFQINIIIRRYLMFWMQLLMV
AHDELPSKVGINVYSESWDRLLGRHTRLANHFTGDYSGFDTSTPRVLVYA
IIDKINELADDGEVNQRTRRNIIRFVLNRYLISDGVLYEIHGGTPSGFAP
TVMINSVVNEFYLKWSWIGLLKEAGYANQATLYAFHEATEISLYGDDNFV
SVATPVASVYNLTTISNFLGRIGVKLGDGAKTGTIKPFIPLEEVDFLKRQ
FVADSGSTAILCPLKKISIEERLFYVRGGQDEIAALELNIATALCEAFFH
GKEYFSFLEGKIIEAMRKSGVALSRPLPTMESVRAWYMSQRGNTKIRSPS
FEGLGTMSGILNIGLAEARSVGGVACFSGIEFRGRSDDHLMVIPTYIPGG
WRTKQQQTYISFVRDSEKMAQVIKRVAHFSTVVATDKSMAYLVAICIAYS
RGSISRMEVRCHVQNLKVAEMLLCNQICNFL
Legend:
Inside
Membrane
Outside
Re-entrant loop
Beta barrel inside
Periplasm
Interfacial helix
Legend:
Inside
Membrane
Outside
Re-entrant loop
Beta barrel inside
Periplasm
Interfacial helix