POL1_TOTV
RNA1 polyprotein
MSFSKMFPGFNSVTEKCATSSSGSFFSELTASISNFSRTLSNVTKVSSQI
SSHIEDLKPSVTDAASSFTSTCNSVTKLLDKIMTLIEPFIKAYSFVASMY
KSICDMVAKIVASIKDKFTLGFNWVLDKSEDVDVLVIAFLIFAISMLIIV
FICPSSVLDGVVQMTHIVFNTVGNFFSALYKLDWLPTWSQKFSMMAQANV
LPGESMSHSPLSQVVASLIAFGISTLVFVAVPGRPNGLSNPLSKILYSAG
SGAQQCNQLFTLFRNMKDCTSQAFSWVLEIIVDIFGFKNPVLSAISATLS
TDLFTWMEEVDAVCDPAHRLENFANPAFTIKLQHLREQALKISAYIATHP
VAAFMSHRVTAAIXHLDKIYGENCQHTGVGQYRAEPFMVQWYGASGCGKS
TSMRLFINDVLDRMEEPKLNRLYAVSKRDAYWSNYAHQTAILMDDMGALR
DGAGQCQDIKDLIDIKSTQPAPLPMAAVEDKGRHFTSRYIFATSNLISAP
AQCGLTYPDAFERRRDVLVECRKVGEFNTDAPTSHLEFDVVESKRPHAIT
HRGLSYDDLLEYVVAKCKVHAEISGKLYGATSGKVAQVDVSPEEIIASMD
MLNIQDTKQDAKLPVVVVSEEDRVAYSQELTVEALKYAYQGSLNPAAYFP
HDMHKQAIFDVLSESAKETFTRWVNDMLYQGCCNENYRWLIKNIPADYIM
HFKSFIYASTINERSFDVQKQLPDGMAHRAIDADVDTLICVEQMPAHVQF
LYTAFVRYWCRRKMEQPRQSWVVVCYHSIVDYIKNAWYDLPYILRVLIKA
GLILIALNGAFGAVTAFCACWQSNTFPSAEGRGGITNESNSISSRKNKGK
SIFARSLLAQAKGDMLEKWASDDGFINEGLKKNLVVLRLGEGVYFRGTYV
CSGWVMTVAHAFSSLRDGTTFSIIHAQSISKVQYNAKTARFLKEQDIVLL
NVGNPDGPKPDIRKHFPVRDGVCFSKGTQGVCVRAVASKDASQGNLEYLR
FNVMMSKGYLEKVTYQMDSSSFKLESQASYEYHMNGENGDCGTLLLLPNV
QDKQPCIVGIHCASYDEEAAHKGFVASNATAIFRDQLEDLPTGPVKVAMV
RCQLLKDLRARDAALFEEKQVAFVGTLPAEQAATVPHKTTLRRSGLFEAF
GPAETAPSIISASDKRGEGFDPYVAGIQKYNETAQNFDEDIARLAYEGLR
QAILPVLHSQRVPFGKPVTQNEDVVLNGVDGFDYFDGMELSTSCGYPYNK
LGMGTSKREFVEPSGDGDRVQLKRTTPIFDDWEALDVEIRKGNFVELVTT
QCAKDERLPLEKVFGKRKTRLFEILPFHYNMLVRKYFLDFSASLMASHNA
LPCKVGINPGGIEWTLLANGFRAVSDTGFSADYSSFDGRAPIFAFQWFCD
LVDDYYGSPPGSPDSNARHVLLMMASCHYTICENKVFRLVGGMPSGFALT
VIFNSLLNEFYMRYAFISLLRRPHIAAQAIGCKPSDFNKLFVAVYGDDNL
VAVPMELHWYTLPAIAQELEMVNVIIKNGIDKNMDVSSSKMLDLSELTFL
SRGFKRHRLGYVQAPLKWVSIIEPMYWIRPSVGCPDALAMLENIDTGVRE
AFHHGPQVFEKLVTDVQNALKERCFPATTFPTYFELEQDWLVEVTGNPAI
GLIKELHIAASAFVPLPPGNTVLNFSDGVHTFADRVSFCSSRTAAAQQWD
TTTVLVNCTGAKRPTWVRGPTTWRDFEGLIWPYTMAAIKDHICSIVTKGV
TKPHVVFVCGNGYAIGPVCAALYCLSTGQYSSQDVVVRLRTIADVTDLSQ
YPGGCAKYLLKCADTREEELADTCKIAQAKGETPAYIPQGGFSLGNFRIV
QGRIDLQLAQRLPFTVGPYGGWGQHTTRELKLLLKDMEKIYQILVQRESF
ITLYFDYLSSEQVMLLVDFLRLQGFFPRQNDVDYLLKAFKLSKQRHNKEN
CHTVYFRKPFLSRKMTMGSKEILSATAAESLFGMDVSANVLKSRLLHLQK
PIKCSSMELAFKIYCVIQGHLSKEVVTHFQRMYQQDLTEGIIEKVILWLT
ATLSESFPVDLVDVPLGLDNIEIQDKGFSLNPNNINMNACDAILFQLTEC
YNRSTKKHVFCRYTTASSLVVAYVLAHRHQTIDELPSFYATHPDVLLLTP
ILTGYKAP
Legend:
Inside
Membrane
Outside
Re-entrant loop
Beta barrel inside
Periplasm
Interfacial helix
Legend:
Inside
Membrane
Outside
Re-entrant loop
Beta barrel inside
Periplasm
Interfacial helix