Q6QDR1_PRRSV
Nonstructural proteins ORF1a
MSGILDRCTCTPNARVFMAEGQVYCTRCLSARSLLPLNLQVPELGVLGLF
YRPEEPLRWTLPRAFPTVECSPAGACWLSAIFPIARMTSGNLNFQQRMVR
VAAEIYRAGQLTPAVLKALQVYERGCRWYPIVGPVPGVAVFANSLHVSDK
PFPGATHVLTNLPLPQRPKPEDFCPFECAMADVYDIGHGAVMYVAKGKVS
WAPRGGDEAKFETVPRELKLIANQLHISFPPHHAVDMSKFVFIAPGSGVS
MRVECPHGCLPANTVPEGNCWWRLFDSLPLDVQNKEIRRANQFGYQTKHG
VAGKYLQRRLQANGLRAVTDTDGPIVVQYFSVRESWIRHFRLAEEPSLPG
FEDLLRIRVEPNTSPLSDKGGKIFRFGSHKWYGAGKRARKARSGMTTTVA
HRALPAREIQQAKKHEDAGADKAVHLRHYSPPADGNCGWHCISAIANRMV
NSKFETTLPERVRPSDDWATDEDLVNTIQILKLPAALDRNGACVGAKYVL
KLEGEHWTVSVTLGMSPSLLPLECVQGCCEHKSGLGPPDAVEVFGFDPAC
LDRLAEVMHLPSSVIPAALAEMSGDPNCPASPVTTVWTVSQFFARHRGGE
HPDQVRLGKIISLCQVVEECCCHQNKTNRATPEEVAARIDQYLHGATSLE
ECLIRLERVCPPSAADTFFDWNVVLPGVGASTQTTKQLHVNQCRALVPVV
TQEPLDKDSVPLTAFSLSNCYYPAQGDEVRHRERLNSVLSKLEGVVREEY
GLTPTEPGPRPALPNGLVELKDQMEEDLLKLVNAQATSEMMAWAAEQVDL
KAWVKNYPRWTPPPPPPRVQPRKTKSVKSLPGNKPVPAPRRKVRSDCGSP
ILMGDNVPDGREDLTVGGPLDLSTPSEPMTPLSEPALMPALQYISRPVTS
LSVLAPVPAPRRTVSRPVTPLSEPIFVSAPRHKFQQVEEANLAATTLTHQ
DEPLDLSASSQTEYEASPLTPLQNMGILEVGGQEAEEVLSEISDTLNDIN
PAPVSSSSSLSSVKITRPKHSAQAIIDSGGPCSGHLRREKEACLSIMREA
CDAAKLSDPATQEWLSRMWDRVDMLTWRNTSAYQAFRILDGRFEFLPKMI
LETPPPYPCGFVMLPHTPAPSVGAESDLTIGSVATEDVPRILGKIENAGE
MPNQGLLTSFGEEPVCDQPVKDSWMSSRGFDESTTAPSAGTGGADLPTDL
PPSDGLDADEWGPLRTVRKKAERLFDQLSRQVFNLVSHLPVFFSHLFKSD
SGYSPGDWGFAAFTLFCLFLCYSYPFFGFVPLLGVFSGSSRRVRMGVFGC
WLAFAVGLFKPVSDPVGTACEFDSPECRNVLHSFELLKPWDPVRSLVVGP
VGLGLAILGRLLGGARYIWHFLLRLGIVADCILAGAYVLSQGRCKKCWGS
CVRTAPNEIAFNVFPFTRATRSSLIDLCDRFCAPKGMDPIFLATGWRGCW
TGRSPIEQPSEKPIAFAQLDEKRITARTVVAQPYDPNQAVKCLRVLQAGG
AIVAEAVPKVVKVSAIPFRAPFFPTGVKVDPECRIVVDPDTFTTALRSGY
STTNLVLGVGDFAQLNGLKIRQISKPSGGGPHLIAALHVACSMALHMLAG
VYVTAVGSCGTGTNDPWCTNPFAVPGYGPGSLCTSRLCISQHGLTLPLTA
LVAGFGLQEIALVVLIFVSIGGMAHRLSCKADMLCVLLAIASYVWVPLTW
LLCVFPCWLRWFSLHPLTILWLVFFLMSVNMPSGILTVVLLVALWLLGRY
TNVVGLVTPYDIHHYTNGPRGVAALATAPDGTYLAAVRRAALTGRTVLFT
PSQLGSLLEGAFRTRKPSLNTVNVVGSSMGSGGVFTIDGKIKCVTAAHVL
TGNSARVSGVGFNQMLDFDVKGDFAIADCPNWQGAAPKTQFCEDGWTGRA
YWLTSSGVEPGVIGNGFAFCFTACGDSGSPVITEAGELVGVHTGSNKQGG
GIVTRPSGQFCNVAPIKLSELSEFFAGPKVPLGDVKVGSHIIKDICEVPS
DLCALLAAKPELEGGLSTVQLLCVFFLLWRMMGHAWTPLVAVGFFILNEV
LPAVLVRSVFSFGMFVLSWLTPWSAQVLMIRLLTAALNRNRLSLAFYSLG
AATGFVADLAATQGHPLQAVMNLSTYAFLPRIMVVTSPVPVIACGVVHLL
AIILYLFKYRCLHNVLVGDGAFSAAFFLRYFAEGKLREGVSQSCGMNHES
LTGALAMRLNDEDLDFLTKWTDFKCFVSASNMRNAAGQFIEAAYAKALRI
ELAQLVQVDKVRGTLAKLEAFADTVAPQLSPGDIVVALGHTPVGGIFDLK
VGSTKHTLQAIETRVLAGSKMTVARVVDPTPTPPPAPVPIPLPPKVLENG
PNAWGDEDRLNKKKRRRMEAVGIFVMGGKKYQKFWDKNSGDVFYEEVHDN
TDAWECLRVDNPADFDPEKGTLCGHTTIEDKTYSVYASPSGKKFLVPVYP
ESKKNQWEAAKLSVEQALGMMNVDGELTAKEVEKLKRIIDKLQGLTKEQC
LNC
Legend:
Inside
Membrane
Outside
Re-entrant loop
Beta barrel inside
Periplasm
Interfacial helix
Legend:
Inside
Membrane
Outside
Re-entrant loop
Beta barrel inside
Periplasm
Interfacial helix