R1AB_LIYV9
Replicase polyprotein 1ab
MALEVESAFSLSYLLKENKQTSNNLFSLIQVPYTKMTHAKGKKTHLLRCI
LGSPFETLTKSSIRRSLKNLREVCNLPYCNFKKIPKNISYKYQNPFLKLY
EINNNFINCKVGATGNTNSTYDWRNLSTIGNGWSVTSYHNDSVSRLHVSM
VNNIPNSNTKKLSWWVTRVRSKNPWKRPYKVIYQRDFRDDGIKPYVSEFI
LYAPKNRADLEMQSILLSSVECFQDIKYALNYWTNLKFKEICNSALKRFT
QTNIIITPVKPRVVSVNKAREVSSSVEVKLQRYEREGEVFVVSKAGKEDT
RVLNDDNAIRNLFNATLNGGKYKLHPEAKSATGKRFKYYKDGFCWLDVFA
DANRRIPEWVKPHCLLTGSVLMSCGLWDFAKRKMVSVSHGLLHYDRKLER
SSARAGVRDFVGASNEAVQREDFRDLDLRVEEFAERVLETANLRSDNRLI
DNILTRASDYINKKSKESKELDINVCLSMDEKKMITNLFPDIQMSFNQKS
YSNHGVFNAMRACENFYFSRKFKNSDYIDAGGDVVSTLRSKNHNVHICSP
RLDLKDAARHIQRATVIDGLKGYGETISFCTNKTEDCAVNRDIIIAVEVY
DMTLRDMAKAMLSHGSRKFEFSCIIPPEIFTKECNVELYEGRLKVTRIGD
NVEYYYGSNGETFSHSCQTLKDILSVQVFQFGGRVFKKTLEHSRGQLHFF
SICICEKIEPGSVKLKTYYQRSELDKVTLRIPVKDSFGVVTHYIIKEDRE
FVSSMIEYVANTGIKIDDKMVEWTYSQYRAKKTVTIKSGKVTQKETRIRK
ELIPGFIAIIMSEGIRAREKTHYLAKMLYTSHYKPSIVNIIFRLIMHFLG
GTKRFIYESLVDCLKFLTNSDYIDTIVNTESRIEDLDKWFVFEQNVTITT
DAEDQPSILEQSVKTFLSKYSEDVYERGDRSEFELEEFSSEQDLVDQLLN
SGGGSKEDEWFYSYIFSIVRTKCTLSLAWRWTNRIFNFITSCRAKGKDFV
KYIYEIIKIIINKPWEALCHYLVQGYKTVLKIPMTCVDSVNYLKRKSLEK
ILSYFSHERADDEYIFPGYDSDFSEESGDYGDENTELDSRSRCTVIKSKV
EMLFRNIKGHIEKFLQRCGIIDQYNKIYHWFKSILTDVDCFNSVLNFITH
TGCDALLAVLTGHFSIASCALKFMTDVVIEKNLSEKHHTTTKLIAGNLTQ
CIYKLDFIHPIWIPIRWGVKEISKIHIKKKLLNWRSTKEVTNESICKDLV
HKSYIKYFDIKKAVWLLWFSLLIIFLHPTLGFFILFSIYPAIEIKRYYNN
VVCFNNIKMSYPHVIDRLGGTYNFAKLKKAVREKFSENKSQGVKISEIPA
EKDEDVMPPLEEVETPKRSVGRPSSKQDDIEDECNIKEDPTESLNFSNIE
ATSNRYDTLRVGNSKLCKFLRFYPKSKCYANIQTGDLIRDSIEEFYHLER
SKLDIEISKMQRVVEIMNDTGRMLDNVRRMIDDRSMYVTLDGVSWYRLGC
KDKNPAKEDFKAIFDHNFNIMEGNAKVKEFAVSSDEWRGMYSNERCRAIE
QLFNDNNEMVRRPDVNGLKFYNKPPGAGKTTTIAKLMSKDLKNKVKCLAL
SYTKVGRLELIDKLKKDGIEKPEKYVKTYDSFLMNNDNILEIVNLYCDEV
FMMHAGHFLTLLTKIAYQNGYCYGDVNQIPFINRDPYTPAYLSREFFRKQ
DLNYDTYTYRCPLDTCYLLSNLKDEMGNIIYAGGVKNVNEVYPTIRSLNL
FGINVVGEVPVEYNAKYLTFTQDEKLNLQRHIDSQGGCRNAVSTVNEAQG
CTFSEVNLVRLVQFDNPVMSDINQFVVAISRHTTTFKYFTPHSRLNDRVS
NAISSLQSVSDFVLKTIILDSAFDVYTLNLTHRDFKLPLCRPPAARYESI
IDLMDIISPGVAFYNYLHRTLIFEYSDYYLPPCEDLRITLSKSKPYHPGA
YVVSKILGKGERNRPNTWKQVIQSLSHRNFNAPIINHKLDVKRSAQILYD
SVVKSLRQDRLTEWYEPILPDLFKIGKWLDDRDGSKYRMLNRRLDFASLA
DKFKTLNLMVKGETKPKMDLSTYDSYNAPANIVYYQQIVNLYFSPIFLEC
FARLTYCLSDKIVLYSGMNTDVLAELIESKLPLGLNAYHTLEIDFSKFDK
SQGTCFKLYEEMMYKMFGFSPELYDRDFKYTEYFCRAKATCGVDLELGTQ
RRTGSPNTWLSNTLVTLGMMLSSYDIDDIDLLLVSGDDSLIFSRKHLPNK
TQEINKNFGMEAKYIEKSSPYFCSKFIVELNGKLKVIPDPIRFFEKLSIP
IRQEDFVNGSVVKERFISFKDLMKEYDNDVAVIRIDEAVCYRYSIPVGCS
YAALCYIHCCMSNFVSFRRIYDNCEIVWI
Legend:
Inside
Membrane
Outside
Re-entrant loop
Beta barrel inside
Periplasm
Interfacial helix
Legend:
Inside
Membrane
Outside
Re-entrant loop
Beta barrel inside
Periplasm
Interfacial helix