Visitors: | 312927 |
---|---|
# of TMPs: | 15327 |
Server version: | v2.0.0 |
Database release: | d.2.2 |
Release date: | 22.07.2024 |
HTP viewer for R1A_CVM2
R1A_CVM2
Replicase polyprotein 1a
Evidence:
TOPDOM
Reliability:
87.87
# of TM segments:
8
Cross ref(s)::
UniProt: R1A_CVM2
MAKMGKYGLGFKWAPEFPWMLPNASEKLGSPERSEEDGFCPSAAQEPKTK GKTLINHVRVDCSRLPALECCVQSAIIRDIFVDEDPLNVEASTMMALQFG SAVLVKPSKRLSIQAWAKLGVLPKTPAMGLFKRFCLCNTRECVCDAHVAF QLFTVQPDGVCLGNGRFIGWFVPVTAIPAYAKQWLQPWSILLRKGGNKGS VTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSRKAYALLKGYRGVKS ILFLDQYGCDYTGRLAKGLEDYGDCTLEEMKELFPVWCDSLDNEVVVAWH VDRDPRAVMRLQTLATIRSIGYVGQPTEDLVDGDVVVREPAHLLAANAIV KRLPRLVETMLYTDSSVTEFCYKTKLCDCGFITQFGYVDCCGDACDFRGW VPGNMMDGFLCPGCSKSYMPWELEAQSSGVIPKGGVLFTQSTDTVNRESF KLYGHAVVPFGSAVYWSPYPGMWLPVIWSSVKSYADLTYTGVVGCKAIVQ ETDAICRSLYMDYVQHKCGNLEQRAILGLDDVYHRQLLVNRGDYSLLLEN VDLFVKRRAEFACKFATCGDGLVPLLLDGLVPRSYYLIKSGQAFTSMMVN FSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKIT EWFDLAVDTAASAAGWLCYQLVNGLFAVANGGITFLSDVPELVKNFVDKF KVFFKVLIDSMSVSVLSGLTVVKTASNRVCLAGCKVYEVVQKRLSAYVMP VGCNEATCLVGEIEPAVVEDDVVDVVKAPLTYQGCCKPPTSFEKICVVDK LYMAKCGDQFYPVVVDNDTIGVLDQCWRFPCAGKKVEFNDKPKVKEIPST RKIKINFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPC KEHDVIGTKVCALLNRLAEDYVYLFDEGGEEVIAPKMYCSFSAPDDEDCV AADVVDADENQGDDADDSAALVTDTQEEDGVAKGQVGVAESDARLDQVEA FDIEKVEDPILNELSAELNAPADKTYEDVLAFDAIYSEALSAFYAVPGDE THFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLEMQKLWLSYKSSY NKEFVDKLVKSVPKSIILPQGGYVADFAYFFLSQCSFKAYANWRCLKCDM DLKLQGLDAMFFYGDVVSHVCKCGTGMTLLSADIPYTLHFGLRDDKFCAF YTPRKVFRAACVVDVNDCHSMAVVDGKQIDGKVVTKFNGDKYDFMVGHGM AFSMSAFEIAQLYGSCITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAH GAGVAGAIAKAAGKSFIKETADMVKNQGVCQVGECYESTGGNLCKTVLNI VGPDARGHGKQCYSFLERAYQHINKCDDVVTTLISAGIFSVPTDVSLTYL IGVVTKNVILVSNNKDDFDVIEKCQVTSIAGTKALSLQLAKNLCRDVKFE TNACDSLFSDSCFVSSYDVLQEVELLRHDIQLDDDARVFVQAHMDNLPAD WRLVNKFDSVDGVRTVKYFECPGEIFVSSQGKKFGYVQNGSFKVASVSQI RALLANKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCS AIHKGKVFFQYSGLSAADLVAVTDAFGFDEPQLLKYYNMLGMCKWPVVVC GNYFAFKQSNNNCYINVACLMLQHLSLKFHKWQWQEAWNEFRSGKPLRFV SLVLAKGSFKFNEPSDSTDFMRVVLREADLSGATCDFEFVCKCGVKQEQR KGVDAVMHFGTLDKGDLAKGYTIACTCGNKLVHCTQLNVPFLICSNKPEG KKLPDDVVAANIFTGGSLGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTD CLYLKNLKQTFSSKLTTFYLDDVKCVEYNPDLSQYYCESGKYYTKPIIKA QFRTFEKVEGVYTNFKLVGHSIAEKFNAKLGFDCNSPFTEYKITEWPTAT GDVVLASDDLYVSRYSGGCVTFGKPVIWLGHEEASLKSLTYFNRPSVVCE NKFNVLPVDVSEPTDKGPVPAAVLVTGALSGAATAPGTAKEQKVCASDSV VDQVVSGFLSDLSGATVDVKEVKLNGVKKPIKVEDSVVVNDPTSETKVVK SLSIVDVYDMFLTGCRYVVWMANELSRLVNSPTVREYVKWGMTKIVIPAK LVLLRDEKQEFVAPKVVKAKVIACYSAVKWFFLYCFSWIKFNTDNKVIYT TEVASKLTFNLCCLAFKNALQTFNWNVVSRGFFLVATVFLLWFNFLYANV ILSDFYLPNIGFFPTFVGQIVAWVKTTFGIFTLCDLYQVSDVGYRSSFCN GSMVCELCFSGFDMLDNYDAINVVQHVVDRRVSFDYISLFKLVVELVIGY SLYTVCFYPLFGLIGMQLLTTWLPEFFMLETMHWSARFFVFVANMLPAFT LLRFYIVVTAMYKIFCLCRHVMYGCSRPGCLFCYKRNRSVRVKCSTVVGG TLRYYDVMANGGTGFCAKHQWNCLNCSAFGPGNTFITHEAAADLSKELKR PVNPTDSAYYLVTEVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLH SKVKGVPETHVVVVENEADKAGFLNAAVFYAQSLYRPMLLVEKKLITTAN TGLSVSQTMFDLYVDSLLGVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMD TFIGCARRKCAIDSDVETKSITKSIMSAVNAGVDFTDESCNNLVPTYVKS DTIVAADLGVLIQNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLR KACSKTGLKIKLTYNKQEANVPILTTPFSLKGGAVFSKVLQWLFVVNLIC FIVLWALMPTYAVHKSDMQLPLYASFKVIDNGVLRDVTVTDACFANKFIQ FDQWYESTFGLVYYRNSRACPVVVAVIDQDIGYTLFNVPTKVLRYGFHVL HFITHAFATDSVQCYTPHMQIPYDNFYASGCVLSSLCTMLAHADGTPHPY CYTEGIMHNASLYDSLAPHVRYNLANSNGYIRFPEVVSEGIVRIVRTRSM TYCRVGLCEDAEEGVCFNFNSSWVLNNPYYRAMPGTFCGRNAFDLIHQVL GGLVRPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVVIN VIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVM YGAIMPLWFCIIYVAVVVSNHALWLFSYCRKLGTEVRSDGTFEEMSLTTF MITKESYCKLKNSVSDVAFNRYLSLYNKYRYFSGKMDTAAYREAACSQLA KAMETFNHNNGNDVLYQPPTASVTTSFLQSGIVKMVFPTSKVEPCVVSVT YGNMTLNGLWLDDKVYCPRHVICSSADMTDPDYSNLLCRVISSDFCVMSG RMSLTVMSYQMQGSLLVLTVTLQNPNTPKYSFGVVKPGETFTVLAAYNGK SQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGC HTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAILNRCNWFVQ SDSCSLEEFNVWAMTNGFSSIKADLVLDALASMTGVTVEQILAAIKRLYS GFQGKQILGSCVLEDELTPSDVYQQLAGVKLQSKRTRVVKGTCCWILAST LLFCSIISAFVKWTMFMYVTTHMLGVTLCALCFVSFAMLLVKHKHLYLTM FIMPVLCTLFYTNYLVVYKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVV LLVAMVFVTMRSINHDVFSVMFLVGRLVSLVSMWYFGANLEEEVLLFLTS LFGTYTWTTMLSLATAKVIAKWLAVNVLYFTDVPQVKLVLLSYLCIGYVC CCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALVL NFKLLGIGGVPVIEVSQIQSRLTDVKCVNVVLLNCLQHLHIASSSKLWQY CSTLHNEILATSDLSVAFDKLAQLLVVLFANPAAVDSKCLASIEEVSDDY VRDSTVLQALQSEFVNMASFVEYELAKKNLDEAKASGSANQQQIKQLEKA CNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTML FSMIRKLDNQALNSILDNAVKGCVPLNAIPSLTSNTLTIIVPDKQVFDQV VDNVYVTYAGNVWHIQSIQDADGAVKQLNEIDVNITWPLVIAANRHNEVS SVVLQNNELMPQKLRTQVVNSGSDMNCNTPTQCYYNTTGMGKIVYAILSD CDGLKYTKIVKEDGNCVVLELDPPCKFSVQDVKGLKIKYLYFVKGCNTLA RGWVVGTLSSTVRLQAGTATEYASNSAIRSLCAFSVDPKKTYLDYIQQGG APVTNCVKMLCDHAGTGMAITIKPEATTNQDSYGGASVCIYCRSRVEHPD VDGLCKLRGKFVQVPLGIKDPVSYVLTHDVCQVCGFWRDGSCSCVGTGSQ FQSKDTNFLNGFGVQV
Legend:
Inside
Membrane
Outside
Re-entrant loop
Beta barrel inside
Periplasm
Interfacial helix
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Legend:
Inside
Membrane
Outside
Re-entrant loop
Beta barrel inside
Periplasm
Interfacial helix